PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03182.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 445aa    MW: 49080.1 Da    PI: 10.077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03182.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06111131525
                              --SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                              +C++f   G+C++Gd+C F+H
  Rsa1.0_03182.1_g00005.1 111 PCNNFVTKGFCHRGDTCLFSH 131
                              7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4085279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-55377IPR000571Zinc finger, CCCH-type
SMARTSM003560.365378IPR000571Zinc finger, CCCH-type
SMARTSM003560.003981107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.43681108IPR000571Zinc finger, CCCH-type
PfamPF146081.486105No hitNo description
SMARTSM003561.1109133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6110135IPR000571Zinc finger, CCCH-type
PfamPF146080.75111131No hitNo description
PROSITE profilePS5010311.451111134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019198225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-5198223IPR000571Zinc finger, CCCH-type
SMARTSM003560.0045199224IPR000571Zinc finger, CCCH-type
PfamPF146080.26203222No hitNo description
SMARTSM003561.7226250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6227255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4228250IPR000571Zinc finger, CCCH-type
PfamPF146080.066228248No hitNo description
PROSITE profilePS5010310.868228251IPR000571Zinc finger, CCCH-type
SuperFamilySSF1426951.83E-9390441IPR032677GTP cyclohydrolase II
PfamPF009251.7E-5394441IPR032677GTP cyclohydrolase II
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MASQTCIKNK SVPSEEAKAT KKEAKARKKI TQERIALGVK KLKLKPPVAP RPKPIIFCRH  60
HLKGRCHEGE QCKFSHDTTP ETKSLPCCYF ATQSCMKGDD CPYDHDLSKY PCNNFVTKGF  120
CHRGDTCLFS HKGTPQAASD RPVANVTTSS SNIAAASSSF EALNVKSGVK ENDLSKNQEK  180
MDSQTCIKNK SVPSKEAKAR KKPCRYLATQ SCMKGDDCPY DHDLLKYPCI NFVTNGFCHM  240
GDKCLFSHKA ASDRPGENVT ISSSNTAAAS VLPQKSNKQT VRQAIARLQG IQPRVSSSST  300
FLKPSSQSNQ KNSTVASSSK INEHATPPQL PPLRKPSVVP KGNISSKSPE FLSSFSHGKQ  360
LIYIWSESES CDASSLKGFN VYKYRRKRDK LVERITVSRL PTKWGLFQAY CYRSKLDGAE  420
NIALVKGNIG NGQDILVSVS SRKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384389RRKRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280089.11e-78hypothetical protein CARUB_v10025972mg, partial
SwissprotQ9LTS71e-72C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLR0EV461e-78R0EV46_9BRAS; Uncharacterized protein (Fragment)
STRINGscaffold_802252.11e-71(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516